Seed Selection

Classify HSV proteins by viral life cycle stage and extract the human proteins known to interact with them.

HSV protein list optional

Provide UniProt IDs of HSV proteins, one per line (TXT or CSV, up to 10 MB). Default: aggregated HPIDB + PHISTO dataset.

or drag it here

Host–pathogen interaction data optional

Provide two columns, Pathogen_Uniprot_ID and Human_Uniprot_ID, one interaction per row (XLSX, CSV, or TSV, up to 10 MB each). Default: merged alongside HPIDB + PHISTO, not a replacement.

or drag them here

Output

Choose whether to split HSV proteins into functional categories and find each category's interacting human proteins, or just get all their interacting human proteins without splitting.

Functional categories Classify HSV proteins by viral life cycle stage (Topf et al.) and get one seed set per stage. Human interactome only Skip classification — just the human proteins that interact with the given HSV proteins.

Uses the default HSV protein list and interaction dataset unless you upload your own.

Running 00:00 elapsed

Classifying HSV proteins by life cycle stage and extracting interacting human proteins…

Completed Finished in 03:42

Quality report

MultiQC report

No MultiQC report was generated for this run.

Result files

seed-selection-results.zip

Seed protein sets per life cycle stage and the run log

Failed Stopped after 01:12

The workflow couldn't parse the uploaded HSV protein list. Confirm it's a plain list of UniProt IDs, one per line, then try again.